SEQanswers


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» Online Users: 240
9 members and 231 guests
akh22, dhuh, dolphing, jesus garcia, kaluo8756, ksw9, marcelonamaral, Olaf Blue, scetutede
Most users ever online was 706, 12-16-2013 at 08:38 AM.
» Stats
Members: 48,544
Threads: 27,922
Posts: 121,629
Top Poster: GenoMax (2,296)
Welcome to our newest member, siddha
» New Posts
Title, Username, & Date Last Post Replies Views Forum
RNA-seq analysis with stranded and unstranded data
siddha
Today 06:42 AM
by siddha
0 10 RNA Sequencing
BLASTP problems
heculase
Today 06:19 AM
by heculase
2 85 Bioinformatics
Would PacBio RII reads be useful at 1X?
jwag
Today 06:11 AM
by sarwar
7 771 Pacific Biosciences
Filtering rRNA out using Bowtie2
GWind
Today 05:59 AM
by Matt.Ralston
3 2,948 Bioinformatics
Issue with BiSeq for DMR analysis
shocker8786
Today 05:24 AM
by shocker8786
6 305 Bioinformatics
does SOAPdenovo2 have an algorithm bias for...
galloucf
Today 05:04 AM
by galloucf
0 54 Bioinformatics
ICGC-TCGA DREAM Somatic Mutation Calling Challenge
Jan 27, 2014 - 5:15 AM - by khoulahan
Introducing the ICGC-TCGA DREAM Somatic Mutation Calling Challenge

We are very excited to announce an international effort to benchmark methods for identifying somatic mutations in cancer genomes from whole-genome sequencing. This message outlines the competition. We encourage all groups to download a set of standard datasets and submit their results. This will be useful to both algorithm-developers, to benchmark their newest techniques, and to data-analysts, to verify their current pipelines are internationally competitive! Details below, and registration at:

... [Read More]
6 Replies | 3,501 Views
SEQstandards and MINSEQE: Minimum Information about a high-throughput SeQuencing Expt
Nov 13, 2012 - 11:20 AM - by Joann
Introduction to the forum: a new standards page at the SEQWiki.

Our new Wiki page hopes to be a quick and easy source of standards guidance from FGED-MINSEQE as well as various other global standards initiatives relevant to forum members with the idea of helping to put things out there sooner than later. The FGED board has chosen SEQanswers as the most appropriate location in the entire webverse to host feedback opportunities on their consensus format for ultra high through put sequencing experiments. The forum is a great place to conduct discussions, and already has been active in exploring terminology issues and more. This thread would be a place to start collecting these discussions, plus feedback, inquiries and input from our forum members and also to refer students, especially, to the new Wiki page material on formal standards guidelines for sequencing and publishing sequence data.
8 Replies | 25,606 Views
Oxford Nanopore @ ASHG
Nov 07, 2012 - 9:29 AM - by GW_OK
New thread started for ONT discussion as the old one was getting long. Also, GridION spotted in the wild?

Quote:
Originally Posted by twitter
Roger Pettett ‏@zerojinx

Guess that ware! #ashg2012 pic.twitter.com/Umfu2chX



So it's not a hollow box...

A call out to all ASHG attendees to please document ONT's announcements and hardware here for the community not attending.
80 Replies | 76,188 Views
SEQanswers published in Bioinformatics
Mar 14, 2012 - 3:40 AM - by marcowanger
Hi,

We are excited to tell you the official publication for SEQanswers is online now at Bioinformatics.

Highlights:

(1) Avg response time to a new post in SEQanswers is less than 1 Day. Still decreasing !
(2) #Discussion & #Post per month keep rising !

SEQanswers: An open access community for collaboratively decoding genomes

We have more updated version of the figures, which is even more impressive. We plan to put them into SEQwiki
23 Replies | 26,437 Views
New Tech at AGBT
Feb 17, 2012 - 1:28 AM - by aeonsim
I thought it might be useful to collate the bits and pieces about new platforms discussed during AGBT (Those that don't already have a thread), for those of us unlucky enough not to attended. Grabbing the info from various tweets listed at: http://pathogenomics.bham.ac.uk/blog...-day-2-tweets/

If any one at AGBT could supply additional information from the talks, that'd be appreciated or any links to blogs covering the tech.

GnuBIO

Read Length: 1000bp
Accuray: Phred 70+
Holopolymers: Phred 70+ to 9bp
Sample Prep: < 1min

System is rackable, ~30lbs, Dry Instrument fludics in cartridge. Beta Mid-2012, commercial end of 2012? Real time Variant calling, each base queried 6 times.

Source:
http://t.co/JPKbR7L2
... [Read More]
47 Replies | 36,241 Views
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