ERANGE

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Application data

Biological application domain(s) RNA-Seq alignment, RNA-Seq quantification, ChIP-seq, DNA transcription
Created at Caltech
Maintained? Yes
Software features RNAseq analysis, Chipseq analysis
Programming language(s) Python
Contact: [email protected]

Summary: ERANGE is a Python package for doing RNA-seq and ChIP-seq.

ERANGE is a descendant of the ChIPSeq mini peak finder (Johnson, 2007). In particular, the RNAseq analysis uses some of the very same code to access Cistematic. Version 2.0 is the first released in the wild and is "Bed"-centric. In particular, it is not optimized for speed!

Links


References

  1. Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. 2008. Nature Methods


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