Genomics

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No EDAM term matching Genomics.


MAPPED TO EDAM_topic:0622


Query returned 125 results.

  Biological domain Bioinformatics method Input format Output format
ABMapper Genomics
Transcriptomics
Read mapping
Sequence alignment
SAM SAM
BED
AnCorr Genomics Correlation
Statistical calculation
TXT
BED
GFF
WIG
BigWig
BEDGraph
SAM
BAM
ELAND
HTML
Table
Graphics (png)
ANNOVAR Genomics
Genetics
Annotation
Variant prioritisation
Array Suite (Array Studio/Server) Genomics
SNP detection
Indel detection
Read mapping
Gene expression profiling
BAMseek Genomics
Transcriptomics
Sequence alignment visualisation SAM
BAM
VCF
BEDTools Genomics Mapping BED
BAM
GFF
VCF
BED
BAM
GFF
VCF
BigBWA Genomics
Resequencing
Exome capture
Whole genome resequencing
Sequencing
Exome
Exome analysis
Exome and whole genome variant detection
Read mapping
Mapping
Sequence alignment
FASTQ
FASTA
BAM
SAM/BAM
BioJava Genomics
BioPerl Genomics
BioPHP Genomics
Biopieces Genomics Sequence alignment
Sequencing quality control
Sequence analysis
Visualisation
BioRuby Genomics
Bismark Epigenomics
Genomics
DNA methylation
Bisulfite mapping
Read mapping
Methylation calling
FASTQ
FASTA
SAM (or custom)
BreakDancer Genomics
Structural variation
Indel detection
Breakway Whole genome resequencing
Genomics
Structural variation
Indel detection
Genetic variation
Sequence analysis
SNP calling
BAM TXT
CLCbio Genomics Workbench Genomics
Whole genome resequencing
Sequence assembly (de novo assembly)
SNP detection
Indel detection
ChIP-seq
RNA-Seq
Regulatory RNA
Transcriptomics
Mapping
Read mapping
Sequence assembly
Sequence alignment
Ab-initio gene prediction
Adapter removal
Annotation
Bisulfite mapping
SNP calling
Sequence assembly (de-novo assembly)
Heat map generation
Sequence assembly validation
FASTA
FASTQ
GenBank
SAM
BAM
Illumina Bustard
ELAND
CSFASTA/CSQUAL (ABI SOLiD)
FASTA
FASTQ
GFF
GenBank
SAM
BAM
ACE
Nexus
CSV
PDF
XLS
CLEVER Genomics
Structural variation
Copy number estimation
BAM Tab separated
CNANorm Cancer biology
Copy number estimation
Genomics
Peak calling
Standardisation and normalisation
Delimited Text
SAM
BAM
Delimited Text
ConDeTri RNA-Seq
Sequencing
Genomics
Sequence trimming FASTQ FASTQ
Contra Sequencing
Cancer biology
Genomics
Copy number estimation
BAM
BED
VCF
Tab-delimited
Cortex Genomics Sequence assembly
Variant calling
FASTQ
FASTA
FASTA-like
VCF
CRAVAT Genomics
Genetics
Genetic variation
Annotation
Variant prioritisation
Sequence annotation
SNP annotation
Variant classification
VCF
TSV
TSV
DeconSeq Transcriptomics
Metagenomics
Genomics
Sequence contamination filtering FASTA
FASTQ
(Compressed) FASTA
(Compressed) FASTQ
FASTA
FASTQ
DeepTools Genomics
ChIP-seq
Standardisation and normalisation
Visualisation
Conversion
Bed
Bam
Sam
BEDGraph
BedGraph
BigWig
Bed
Bam
Sam
BEDGraph
BedGraph
BigWig
ERNE Genomics
Sequence alignment
Sequencing
Epigenetics
DNA methylation
Read mapping
Bisulfite mapping
FASTQ
(Compressed) FASTQ
SAM/BAM
Est2assembly RNA-Seq alignment
Genomics
Sequence assembly
FAST: Fast Analysis of Sequences Toolbox Genomics
Sequence analysis
Sequence analysis
Sequence parsing
Aligned Sequence Files
Fasta/q
GenBank
Aligned Sequence Files
Fasta/q
GenBank
FastQ Screen Genomics
Transcriptomics
Read mapping
Sequencing quality control
FASTQ Delimited Text
PNG
FindPeaks 4.0 (Vancouver Short Read Package) Genomics
SNP detection
Peak calling
Formatting
Sequence alignment analysis
BED
Maq
SAM
Bowtie
Eland
FASTA
Mapview
ACE
BED
GFF
WIG
Peaks
Regions
PNG
Flexbar Genomics Read pre-processing
DNA barcoding
Adapter removal
Sequence trimming
Quality control
Fasta/q
Csfasta/q
Fasta/q
Csfasta/q
Forge Genomics
Sequence assembly (de novo assembly)
Sequence assembly
FragGeneScan Metagenomics
Genomics
FASTA FASTA
Tab separated
Freebayes Genomics BAM VCF
Fuzzypath Genomics Sequence assembly (de-novo assembly)
Sequence assembly
FASTQ
Galaxy Comparative genomics
Functional genomics
Whole genome resequencing
Sequence assembly
Genomics
Sequence alignment
Sequence assembly
Sequencing quality control
Visualisation
GeeFu Genomics Sequence assembly
GENALICE MAP Genomics Read mapping
Variant calling
FASTQ GAR
BAM
VCF
Genedata Expressionist Genomics
Epigenetics
SNP detection
Indel detection
ChIP-seq
RNA-Seq
Transcriptomics
Sequencing
Copy number estimation
Gene structure
DNA methylation
Laboratory information management
Sequence alignment
Annotation
Bisulfite mapping
Clustering
Gene expression analysis
Genome visualisation
Read mapping
Sequencing quality control
RNA-Seq analysis
Sequence analysis
Statistical calculation
2bit
FASTA
Nib
FASTQ
QSEQ
BAM
SAM
BedGraph
VCF
BED
GDC
GFF
GTF
And many others.
Geneious Phylogenetics
Sequence analysis
Sequence assembly (de novo assembly)
Genomics
Population genetics
Metagenomics
Structural variation
RNA-Seq
Epigenomics
Sequence alignment
Sequence assembly
Sequence assembly validation
Annotation
Genome visualisation
DNA barcoding
Read mapping
Visualisation
Sequence motif discovery
Variant calling
FASTA
FASTQ
GenBank
SAM
ELAND
CSFASTA
CSQUAL
GenomeBrowse Sequence analysis
Sequencing
Sequence alignment
Sequence assembly (de novo assembly)
Exome analysis
Exome and whole genome variant detection
Genetics
Whole genome resequencing
Next Generation Sequencing
Genomics
Sequence alignment visualisation
Sequence assembly visualisation
Visualisation
BAM
GenomeJack Genomics
Personalised medicine
Visualisation BAM
GTF
GFF
BED
BEDGraph
WIG
VCF
TSV
FASTA
Genometa Metagenomics
Genomics
Read mapping
Visualisation
FASTA
FASTQ
SAM/BAM
Delimited Text
GenomeTools Genomics
GenomeView Genomics
Comparative genomics
Transcriptomics
Quality control
Sequencing
Sequence analysis
Visualisation
Sequence alignment visualisation
Plotting and rendering
Genome visualisation
Data retrieval
(Compressed) FASTA
BAM
BED
BEDGraph
Blast output
Clustalw
EMBL
FASTA
GFF
GTF
Multi-fasta
WIG
Gff3
Embl
GenomicTools Genomics
ChIP-seq
RNA-Seq
Genome comparison
Peak calling
Heat map generation
BED
SAM/BAM
GFF
BED
SAM
GFF
GenVision Genomics Visualisation
GigaBayes Genomics
SNP detection
SNP calling
Gk arrays Genomics
Transcriptomics
Metagenomics
Sequence assembly
Sequence error correction
Read mapping
FASTA
FASTQ
Multi-FastA
Golden Helix Epigenomics
Genomics
Sequencing
SNP detection
Copy number estimation
Data handling
Sequencing quality control
Statistical calculation
Genome visualisation
Annotation
Sequence contamination filtering
Collapsing methods
Variant classification
Variant calling
Gowinda Genomics
Population genetics
Population Genomics
Sequencing
Functional enrichment
Ontology comparison
Genome-wide association study
GTF
VCF
Pileup
… further results
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