|Principal bioinformatics method(s)||Sequence assembly|
|Input format(s)||specialized format|
|Software features||De novo assembly, scaffolding|
|Programming language(s)||Perl, C|
Summary: De novo genome assembler from short reads
A novel assembler and scaffolder that uses an efficient hashing strategy. When compared on Pichia or E.coli it performed very well when compared to other de-novo assemblers. It was tested up to Arabidopsis genome size (~120MB) with simulated reads.
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