|Created by||Marc Friedländer and Nikolaus Rajewsky Systems Biology group|
|Biological application domain(s)||Regulatory RNA|
|Created at||Max Delbrück Center, Berlin-Buch|
Summary: Discovering known and novel miRNAs from deep sequencing data
The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data.
The package is freely available for non-commercial purposes. For commercial purposes, please contact them.
- Friedländer MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N.. 2008. Nature Biotechnology
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