Papers Referencing SEQanswers

From SEQwiki
Jump to: navigation, search

Publications about SEQanswers and the SEQanswers WIKI:

Year Publication Title PubMed Publication Link
2012 Bioinformatics SEQanswers: An open access community for collaboratively decoding genomes
2011 Nucleic Acids Research The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis
  • Updated Figure 1 of SEQanswers paper in Bioinformatics. Date as of 20 March 2012

Figure01 2012-02.s.jpg

  • Cumulative number of Peer-reviewed articles and Book that cited SEQanswers. Date as of 27 Jan 2012


  • This is a list of publications that have referenced SEQanswers.

This list also exists on the forums as well. [Depreciated]

Year Publication Lead Author Title PubMed Publication Link
2008 Nature Biotechnology Shendure Next-generation DNA sequencing
2009 Briefings in Bioinformatics Horner Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing
2009 Nature Biotechnology Trapnell How to map billions of short reads onto genomes.
2009 Nature Methods McPherson Next-generation gap
2009 Nature Methods Flicek Sense from sequence reads: methods for alignment and assembly
2009 Nature Reviews Genetics Park ChIP-seq: advantages and challenges of a maturing technology
2009 Trends in Ecology & Evolution Rokas Harnessing genomics for evolutionary insights
2009 Nature Review Genetics Wang et. al. RNA-Seq: a revolutionary tool for transcriptomics
2009 Book: Bioinformatics Matukumalli Sequence Based Gene Expression Analysis n/a
2010 Nature Methods Nielsen Visualizing genomes: techniques and challenges
2010 The Auk Lerner Prospects for the Use of Next-Generation Sequencing Methods in Ornithology n/a
2010 Expert Rev Mol Diagn Corbett Great expectations: using massively parallel sequencing to solve inherited disorders
2010 Briefings in Bioinformatics Li & Homer A survey of sequence alignment algorithms for next-generation sequencing
2010 Briefings in Bioinformatics Huss Introduction into the analysis of high-throughput-sequencing based epigenome data
2010 PLoS Comput Biol Huttenhower A Quick Guide to Large-Scale Genomic Data Mining.
2010 Nucleic Acids Res. Zheng Titration-free massively parallel pyrosequencing using trace amounts of starting material
2010 Genes Magi Bioinformatics for Next Generation Sequencing Data n/a
2010 Genomics Inform Rhie A Simple GUI-based Sequencing Format Conversion Tool for the Three NGS Platforms. n/a
2010 Plant biology Bräutigam & Gowik What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research
2010 Genome Biology Oshlack From RNA-seq reads to differential expression results
2010 PLoS One Krueger Large Scale Loss of Data in Low-Diversity Illumina Sequencing Libraries Can Be Recovered by Deferred Cluster Calling
2010 Eukaryotic Cell Nowrousian Next-Generation Sequencing Techniques for Eukaryotic Microorganisms: Sequencing-Based Solutions to Biological Problems
2011 Nature Review Genetics Nielsen Genotype and SNP calling from next-generation sequencing data
2011 Methods in Molecular Biology Nielsen Outsourcing of experimental work
2011 BMC Genomics Blanca "ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence"
2011 Nature Methods Perkel Coding your way out of a problem
2011 BMC Genomics Kircher at al Addressing challenges in the production and analysis of Illumina sequencing data
2011 PLoS One Huang Rapid Screening of Complex DNA Samples by Single-Molecule Amplification and Sequencing
2011 Molecular Ecology Resources Glenn Field guide to next-generation DNA sequencers
2011 BMC Bioinformatics Deng SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
2011 Heredity Ekblom & Galindo Applications of next generation sequencing in molecular ecology of non-model organisms
2011 Respirology Cullum The next generation: Using new sequencing technologies to analyse gene regulation
2011 BMC Genomics Berninger Conserved generation of short products at piRNA loci
2011 Journal of Genetics and Genomics Zhang The impact of next-generation sequencing on genomics
2011 Nature Genetics Dassanayake The genome of the extremophile crucifer Thellungiella parvula
2011 Investigative Genetics Berglund et. al Next generation sequencing technologies and applications
2011 Current Protocols in Bioinformatics Lincoln D. Stein An introduction to the informatics of "next-generation" sequencing
2011 Journal of Cereal Science Edwards et al DNA sequencing methods contributing to new directions in cereal research n/a
2011 The HUGO Journal Moorthie et al Review of massively parallel DNA sequencing technologies n/a
2011 PLoS ONE Haiminen et al Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the Results
2012 Book: Plant Fungal Pathogens Ronnie de Jonge In Silico Identification and Characterization of Effector Catalogs n/a
2012 Book: Next-Generation MicroRNA Expression Profiling Technology Sarah Aldridge and James Hadfield Introduction to miRNA Profiling Technologies and Cross-Platform Comparison n/a
2012 Book: Bioinformatics for High Throughput Sequencing Paszkiewicz et. al. High-Throughput Sequencing Data Analysis Software: Current State and Future Developments n/a
2012 Future Microbiology Schmieder Insights into antibiotic resistance through metagenomic approaches
2012 Bioinformation Laczik et. al. Geno viewer, a SAM/BAM viewer tool view here
2012 n/a yet (NOT included in above figure) Pomraning et. al. Library preparation for rapid genome Illumina sequencingl n/a YET
Personal tools

wiki navigation
vBSSO Login Form

Reset Password
Single Sign On provided by vBSSO