Sequence analysis

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No EDAM term matching Sequence analysis.


MAPPED TO EDAM_operation:2403, EDAM_topic:0080


Query returned 23 results.

  Biological domain Bioinformatics method Input format Output format
.NET BIO Sequence analysis
BarraCUDA Sequence analysis Read mapping
Sequence alignment
.fastq/.fq
.fq.gz
.bam
SAM
BioNumerics Workflows
Comparative genomics
Quality control
Data handling
Sequence assembly
Epidemiology
Microbial Surveillance
Genotyping
Whole genome resequencing
Sequence analysis
Sequence assembly
Read mapping
Annotation
Variant calling
Comparative genomics
Workflows
Sequence alignment
Genome visualisation
.ab1
(C)FAST(A/Q)
.bam
FNAQual
Compressed fastq
And many others.
Biopython Sequence analysis
Phylogenetics
Population genetics
Protein structure analysis
Sequence parsing SFF
FASTA
FASTQ
QUAL
ACE
AB1
PHD
Phylip
Clustalw
GenBank
EMBL
Nexus
Newick
PIR
Blast output
SFF
FASTA
FASTQ
QUAL
Phylip
Clustalw
GenBank
EMBL
Nexus
Newick
BioSmalltalk Sequence analysis
Phylogenetics
Population genetics
Protein structure analysis
Sequence parsing FASTA
Phylip
Clustalw
GenBank
EMBL
Nexus
Blast output
FASTA
Phylip
Clustalw
GenBank
EMBL
Nexus
Blixem Sequence analysis
Phylogenetics
Sequence alignment visualisation Blast output
FASTA
DNA Chromatogram Explorer Sequence analysis Chromatogram visualisation
File reformatting
FASTA
SCF
ABI
GenBank
SEQ
TXT
FASTA
SCF
SEQ
TXT
FAST: Fast Analysis of Sequences Toolbox Genomics
Sequence analysis
Sequence analysis
Sequence parsing
Aligned Sequence Files
Fasta/q
GenBank
Aligned Sequence Files
Fasta/q
GenBank
Geneious Phylogenetics
Sequence analysis
Sequence assembly (de novo assembly)
Genomics
Population genetics
Metagenomics
Structural variation
RNA-Seq
Epigenomics
Sequence alignment
Sequence assembly
Sequence assembly validation
Annotation
Genome visualisation
DNA barcoding
Read mapping
Visualisation
Sequence motif discovery
Variant calling
FASTA
FASTQ
GenBank
SAM
ELAND
CSFASTA
CSQUAL
GenomeBrowse Sequence analysis
Sequencing
Sequence alignment
Sequence assembly (de novo assembly)
Exome analysis
Exome and whole genome variant detection
Genetics
Whole genome resequencing
Next Generation Sequencing
Genomics
Sequence alignment visualisation
Sequence assembly visualisation
Visualisation
BAM
GenomeView Genomics
Comparative genomics
Transcriptomics
Quality control
Sequencing
Sequence analysis
Visualisation
Sequence alignment visualisation
Plotting and rendering
Genome visualisation
Data retrieval
(Compressed) FASTA
BAM
BED
BEDGraph
Blast output
Clustalw
EMBL
FASTA
GFF
GTF
Multi-fasta
WIG
Gff3
Embl
Lasergene Sequence assembly (de novo assembly)
Genomics
Indel detection
Phylogenetics
Protein structure analysis
Mapping
SNP detection
Sequence analysis
Transcription factors and regulatory sites
Sequence alignment
Sequence alignment analysis
Annotation
Sequence assembly
Chromatogram visualisation
Sequence analysis
Read mapping
PCR primer design
Scaffolding
Peak calling
Megraft Metagenomics
Phylogenetics
Sequence analysis
Community analysis
Rarefaction
Sequence analysis FASTA FASTA
Metaxa Metagenomics
Phylogenetics
Sequence analysis
Community analysis
Hidden Markov Model
Sequence analysis
FASTA FASTA
Tab-delimited file
Summary
MirTrios Genomics
Sequence analysis
De novo mutation detection
Read mapping
Variant calling
De novo mutation detection
VCF BED
MotifLab Sequence analysis
Gene regulation
Transcription factors and regulatory sites
Sequence motifs
ChIP-seq
Sequence motif discovery
Sequence contamination filtering
Genome visualisation
Visualisation
Format conversion
Peak calling
2bit
BED
BigBed
BedGraph
BigWig
Bioprospector
CSV
Delimited Text
Excel
FASTA
GFF
GTF
JASPAR
MEME
Plain text
WIG
XMS
TRANSFAC
Custom Motif format
Custom
Others
BED
BedGraph
Bioprospector
CSV
Delimited Text
Excel
FASTA
GFF
GTF
HTML
JASPAR
MEME
Plain text
WIG
XMS
TRANSFAC
Custom Motif format
Custom
Others
NCBI Genome Workbench Sequencing
Next Generation Sequencing
Sequence annotation
Sequence analysis
Visualisation
Genome visualisation
Omixon Variant Toolkit Comparative genomics
Sequence analysis
Mapping
Indel detection
SNP detection
Sequence alignment
Sequence assembly
Read mapping
FASTQ
CSFASTA
SAM
Most others
SAM
VCF
GFF
Pipeline Pilot Next Generation Sequencing
Gene expression analysis
Sequence analysis
SNP detection
ChIP-seq
RNA-Seq
Sequence assembly (de novo assembly)
Genomics
Whole genome resequencing
Read mapping
Sequence analysis
Variant calling
Gene expression analysis
Comparative genomics
Sequence alignment
Bowtie
BreakDancerMax
BWA
CisGenome
CNV-seq
Cufflinks
FASTQC
GATK
Integrative Genomics Viewer
MACS
Mapreads
MIRA3
MUMmer
SAMtools
SnpEff
Tablet
TopHat
Velvet
Tabix
Artemis
BioJava
BioPerl
BLAST
ClustalW
EMBOSS
HMMER
Jalview
MUSCLE
Primer3
PROSITE
Sim4
Circos
GBrowse2
SeqAn Sequence analysis
Genomics
Phylogenetics
FASTA
FASTQ
SAM
GFF
FASTA
FASTQ
SAM
GFF
SequenceVariantAnalyzer Personalised medicine
Genomics
Sequence analysis
Genetic variation
Annotation
Genome visualisation
SNP calling
SAMtools
HMMCNV
Sva
Spiral Genetics DNA-Seq
Exome and whole genome variant detection
Genomic assembly
Quality control
Mapping
Sequence assembly
SNP detection
Sequence analysis
Whole genome resequencing
Statistical calculation
Sequence alignment
File reformatting
Read mapping
FASTQ
Fastq.gz
VCF 4.1
UGENE Phylogenetics
Genomics
Sequence analysis
Protein structure analysis
Sequence parsing FASTA
GenBank
EMBL
FASTQ
AB1
Stockholm
Clustalw
Fasta.gz
Phylip
MSF
GFF
Newick
ACE
SAM
FASTA
GenBank
Stockholm
Clustalw
Fasta.gz
Newick
ACE
SAM
Personal tools
Namespaces

Variants
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