ShortRead

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Application data

Created by Morgan M, Lawrence M, Anders S
Maintained? Yes
Input format(s) FASTQ, mapview, Bowtie, ...
Programming language(s) R

Summary: ShortRead is an R/BioConductor package for input, quality assessment, manipulation, and output of high-throughput sequencing data.

This is one of the base classes of R to deal with short read data. As it allows quality checking and manipulation of short read data, various images and statistics can be generated.

Links

none specified


References

  1. Morgan M, Anders S, Lawrence M, Aboyoun P, Pagès H, Gentleman R. 2009. Bioinformatics


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