ShortRead

Application data
Created by	Morgan M, Lawrence M, Anders S
Maintained?	Yes
Input format(s)	FASTQ, mapview, Bowtie, ...
Programming language(s)	R

Summary: ShortRead is an R/BioConductor package for input, quality assessment, manipulation, and output of high-throughput sequencing data.

This is one of the base classes of R to deal with short read data. As it allows quality checking and manipulation of short read data, various images and statistics can be generated.

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References

1. Morgan M, Anders S, Lawrence M, Aboyoun P, Pagès H, Gentleman R. 2009. Bioinformatics

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