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Bioinformatics application

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Is the software maintained?:
Bioinformatics methods:
Ab-inito gene prediction (2) · Adapter Removal (software) (5) · Alignment (60) · Alignment Analysis (6) · Alignment viewer (7) · Allelic imbalance (1) · Alternative Splicing (5) · Analysis Pipeline (2) · Annotation (16) · Assembly (72) · Assembly QC (3) · Assembly editing (2) · Assembly quality evaluation (2) · Assembly validation (3) · Assembly visualization (11) · BLAST (1) · Basecaller (12) · Basespace (2) · Biological Contextualization (2) · Biological interpretation (1) · Bisulfite SNP calling (2) · Bisulfite mapping (15) · Bloom filters (1) · Burrows-Wheeler (3) · ChIP-Seq analysis (2) · ChIP-seq differential analysis (1) · ChIP seq (1) · Chromatin motif finding (1) · Chromatogram management (1) · Chromatogram viewer (2) · Classification (1) · Clustering (4) · Clustering and alignment (1) · Collapsing Methods (1) · Colorspace (11) · Command line tool wrappers (3) · Community Analysis (1) · Comparative genomics (2) · Contaminant filtering (3) · Conversion (6) · Copy number estimation (2) · Cost estimation (1) · DNase I footprinting (1) · Data compression (9) · Database (5) · Database interface (1) · Database submission preparation (2) · De-novo assembly (3) · De Bruijn graph (10) · De novo Assembly (1) · Deduplication (1) · Differential Binding (1) · Differential binding sites (1) · Differential expression (5) · Differentially expressed gene identification (9) · Differentially methylated regions identification and annotation (1) · Digital genomic footprinting (2) · Downstream analysis (1) · Empirical Bayes (1) · Error correction (13) · Exome analysis (3) · Expectation Maximization (3) · Expression profiling (3) · FM-Index (5) · Filtering (11) · Format conversion (5) · Functional analysis (1) · GPU (5) · Gap extension (1) · Gene Set Testing (1) · Gene expression analysis (1) · Gene fusions discovery. (2) · Gene ontology (1) · Gene ontology analysis (2) · Gene set enrichment (1) · Gene set enrichment analysis (1) · General bioinformatics (1) · Genetic variation annotation (5) · Genome Alignment (2) · Genome Indexing (1) · Genome browser (8) · Genome wide association studys (1) · Genomic correlations (1) · Genomic overlaps (1) · Genomic region matching (2) · Genomics (2) · Genotyping (1) · Gibbs motif sample (1) · Graph reduction (1) · HLA typing (1) · Hadoop (8) · Haplotype reconstruction (4) · Hash Table Based (1) · Heatmaps (2) · Hidden Markov Model (12) · Hybrid assembly (2) · InDel discovery (2) · Integrated Solution (4) · K-mer analysis (8) · LIMS (2) · Learning algorithm (1) · Localized reassembly/realignment (4) · MCMC (1) · Machine Learning (2) · MapReduce (7) · Mapping (124) · Mapping and variant calling (1) · Methylation Calling (4) · Methylation analysis (1) · MiRNA Prediction (1) · MiRNA analysis (Ref and Ab-initio) (1) · MiRNA profiling (1) · Micro assembly (2) · Mixture model (1) · Motif analysis (4) · Motif comparison (1) · Motif detection (2) · Motif discovery (4) · Motif scanning (1) · Multiple sequence alignment viewer (4) · Mutation detection (2) · Myers Bitvector Algorithm (1) · Normalization (3) · Novel gene discovery (1) · OLC (1) · PCR Primer Design (2) · Paired End (3) · Pathway analysis (1) · Peak-pair calling (1) · Peak calling (17) · Peak detection (3) · Phase pattern prediction (1) · Pipeline Management (1) · Pooled samples (5) · Post-analysis (1) · Preprocessing (3) · Primer removal (1) · Profiles (1) · Profiling short tandem repeats from short reads (1) · Programming Library (18) · Protein Binding Peak Detection (2) · Protocol Management (1) · QC (4) · Quality Control (7) · Quality Trimming (1) · Quality assessement (3) · RNA-Seq analysis (3) · RRNA filtering (1) · Read Alignment (7) · Read alignment (1) · Read depth analysis (3) · Read mapping (8) · Read pre-processing (5) · Read storage (1) · Read summarization (2) · Regression. (1) · SAMtools (1) · SNP calling (6) · SWIFT Filter (1) · Sample Barcoding (8) · Sample Tracking (1) · Scaffolding (8) · Segmentation (1) · Sequence alignment (2) · Sequence alignment comparison (1) · Sequence alignment to a reference genome (1) · Sequence analysis (15) · Sequence annotation (2) · Sequence motif discovery (1) · Sequence parsing (3) · Sequence variation analysis (2) · Sequencing Quality Control (25) · Signal (1) · Simulation (12) · Smith-Waterman (3) · Somatic variant calling (3) · Species frequency estimation (1) · Split-read (3) · Statistical Modelling (2) · Statistical testing (7) · Statistics (7) · Structural variation discovery (3) · Suffix arrays (2) · Targeted de novo assembly (2) · Tilling (2) · Transcript assembly (1) · Transcriptome assembly (1) · Translated nucleotide search (1) · Trimming (15) · Uniquifying (1) · Variant Calling (9) · Variant Classification (4) · Variant Mapping (2) · Variant Prioritization (3) · Variant detection (2) · Viewer (8) · Visualization (47) · Whole genome resequencing (2) · Workflow (3)
Biological domains:
Alignment (6) · Allele-specific transcription (5) · Alternative Splicing (16) · Ancient DNA (1) · Barcoding (1) · Biodiversity (1) · Biomedical Sciences (1) · Bisulfite Sequencing (10) · CLIP-Seq (1) · Cancer biology (3) · ChIP-Seq (58) · ChIP-exo (1) · ChIP-on-chip (9) · Chromosome Walking (1) · Clone verification (3) · Community analysis (3) · Comparative genomics (16) · Comparative transcriptomics (4) · Copy number estimation (20) · DNA-Seq (10) · DNA methylation (22) · DNase-seq (1) · De-novo assembly (32) · De novo Assembly (1) · De novo Sequencing (1) · De novo assembly (4) · De novo sequencing (4) · De novo transcriptome assembly (6) · Differential Expression (3) · Differential methylated regions identification (1) · Epigenomics (29) · Exome (1) · Exome analysis (5) · Exome and Whole genome variant detection (4) · Exome and whole genome variant detection (3) · Functional Genomics (4) · Fusion finding (2) · Fusion genes (7) · Fusion transcripts (11) · Gene Expression Analysis (3) · Gene annotation retrieval (4) · Gene expression (1) · General bioinformatics (pipeline) (8) · Genetics (3) · Genome Wide Association Studies (2) · Genomic Assembly (5) · Genomic Assembly Evaluation (2) · Genomic Assembly Validation (1) · Genomics (113) · Genotyping (9) · HITS-CLIP (1) · High-throughput sequencing (4) · Homology (1) · ICLIP (1) · InDel discovery (30) · In vitro selection (2) · Integrated solution (1) · Mapping (7) · MeDIP-Seq (1) · Metabolic reconstruction (2) · Metagenomics (38) · Metatranscriptomics (5) · Methyl-Seq (1) · MiRNA (11) · MiRNA-Seq (2) · Motif analysis (4) · Motif discovery (1) · Mutations and regulatory sites (1) · Next-generation sequencing (2) · Next Generation Sequencing (9) · Nucleosome Positioning (1) · PAR-CLIP (1) · Pathway analysis (2) · Personal genomics (8) · Phylogenetics (19) · Population Genomics (3) · Population genetics (9) · Population genomics (1) · Protein structure analysis (2) · Protein structures (2) · Pyrotags (1) · Quality Control (8) · RNA-Seq (46) · RNA-Seq Alignment (35) · RNA-Seq Quantitation (31) · RNA Seq analysis (2) · Rarefaction (1) · Read Binning (1) · Read alignment (8) · Reference assembly (2) · Regulatory genomics (4) · Regulatory genomics epigenomics (2) · Resequencing (5) · SNP Annotation (8) · SNP discovery (80) · SNPs (2) · Sequence Quality Control (3) · Sequence analysis (19) · Sequence annotation (3) · Sequence functional annotation (2) · Sequencing (14) · Small RNA (1) · Small RNA Sequencing (1) · Small RNA transcriptome (9) · Somatic mutations (3) · Storage (1) · Structural variation (31) · Targeted assembly (2) · Targeted resequencing (9) · Transcription Factor Binding Site identification (4) · Transcription Factor analysis (1) · Transcription regulation (1) · Transcriptome (3) · Transcriptomics (18) · Transposable Elements (1) · Viral genomics (4) · Viral metagenomics (1) · Whole Genome Resequencing (13) · Whole Genome Resequencing Analysis (2) · Yeast one-hybrid (1) · Yeast two-hybrid (1)

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