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- Bioinformatics application (301)
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Bioinformatics application
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(Bio)Perl (1) ·
Bash (1) ·
C (22) ·
C++ (36) ·
D (1) ·
Fortran (1) ·
JAVA (1) ·
Java (23) ·
Java Swing (1) ·
Matlab (1) ·
Mix (2) ·
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OCaml (1) ·
PHP (2) ·
Perl (24) ·
Python (20) ·
Qt4 library (1) ·
R (16) ·
Ruby (2) ·
Tcl (1) ·
web-based (2)
(partially) MacOS X (1) ·
AIX (1) ·
Compaq Alpha (1) ·
IRIX (1) ·
Linux (50) ·
Linux 64 (8) ·
Mac (4) ·
Mac OS (1) ·
Mac OS X (23) ·
Mac OS X 10.4 and higher (2) ·
Mac OS X 10.6 with Parallels Desktop (2) ·
MacOS (2) ·
OpenBSD (1) ·
PC (1) ·
POSIX (6) ·
Solaris (5) ·
UNIX and Windows (5) ·
UNIX/Linux (3) ·
Unix (13) ·
Vista (4) ·
Windows (22) ·
Windows (Cygwin) (2) ·
Windows (probably) (1) ·
Windows 7 (4) ·
Windows 7 x64 (1) ·
Windows Vista x64 (1) ·
Windows XP x64 (1) ·
all (1) ·
all supporting JVM (1) ·
or XP (2) ·
or XP SP2 (2) ·
platform independant (1) ·
platform-independent (3)
454 (40) ·
ABI SOLiD (31) ·
Affymetrix (2) ·
Agilent (1) ·
Any (2) ·
Any next-gen (1) ·
ELAND (1) ·
GenePix (1) ·
GnuBio (1) ·
Helicos (8) ·
High throughput sequencing data (1) ·
Illumina (53) ·
Illumina array (1) ·
IonTorrent (1) ·
NanoPore (1) ·
PacBio (3) ·
Polonator (1) ·
Roche 454 (2) ·
Roche NimbleGen (2) ·
Roche\454 (1) ·
Sanger (23) ·
Supporting all microarray and next generation sequencing technologies including...
Affymetrix • Agilent • Applied Biosystems • Illumina • Ion Torrent • NimbleGen • Roche/454 Life Sciences • Custom Arrays (1) ·
all sequences (1)
Alignment (31) ·
Alignment Analysis (3) ·
Alignment viewer (3) ·
Annotation (6) ·
Assembly (48) ·
Assembly editing (1) ·
Assembly validation (2) ·
Assembly visualization (11) ·
Basecaller (11) ·
Bisulfite mapping (10) ·
Burrows-Wheeler (2) ·
Chromatogram viewer (2) ·
Colorspace (11) ·
Cost estimation (1) ·
DNA sequence analysis (2) ·
Data compression (2) ·
Database (2) ·
Database submission preparation (1) ·
De Bruijn graph (7) ·
Dedicated file (chromatogram) management (1) ·
Differentially expressed gene identification (3) ·
Expectation Maximization (1) ·
FM-Index (2) ·
File converter (1) ·
Format conversion (3) ·
GPU (2) ·
Gene Set Testing (1) ·
Genome Alignment (1) ·
Genome Indexing (1) ·
Genome browser (4) ·
Hadoop (4) ·
Haplotype reconstruction (5) ·
Hidden Markov Model (5) ·
Hidden Markov Model detection (1) ·
Integrated Solution (2) ·
Integrated solution (3) ·
MapReduce (3) ·
Mapping (71) ·
Methylation Calling (1) ·
Motif analysis (4) ·
Motif comparison (1) ·
Motif finding (1) ·
Negative binomial & conditional binomial model for ChIP-seq peak detection; Gibbs motif sample for de novo motif discovery; Motif enrichment analysis based on matched genomic controls. (1) ·
PCR Primer Design (2) ·
Paired End (3) ·
Peak calling (4) ·
Peak finding (1) ·
Programming Library (6) ·
Programming library (1) ·
Protein Binding Peak Detection (1) ·
Read storage (1) ·
SNP annotation (1) ·
Sample Barcoding (3) ·
Scaffolding (1) ·
Sequence analysis (1) ·
Sequence parsing (2) ·
Sequencing Quality Control (6) ·
Simulation (6) ·
Smith-Waterman (4) ·
Statistics (2) ·
Trimming (1) ·
Variant Prioritization (1) ·
Viewer (2) ·
Visualisation (8) ·
Visualization (5) ·
chromosome walking (1) ·
clustering (1) ·
command line tool wrappers (3) ·
contigging (1) ·
gene ontology analysis (1) ·
genetic variation annotation (4) ·
graph reduction (1) ·
k-mer analysis (3) ·
k-mer extension (1) ·
k-mer search (1) ·
learning algorithm (1) ·
multiple sequence alignment viewer (3) ·
neighbor-joining (2) ·
noise estimation (1) ·
scaffolding (1) ·
split-read (1) ·
statistical testing (1) ·
suffix arrays (2)
Alignment (5) ·
Allele-specific transcription (3) ·
Alternative Splicing (3) ·
ChIP-Chip (5) ·
ChIP-Seq (26) ·
Clone verification (2) ·
Comparative Genomics (7) ·
Copy number estimation (5) ·
DNA Methylation (8) ·
De novo sequencing (3) ·
De novo transcriptome assembly (1) ·
De-novo assembly (23) ·
De-novo transcriptome assembly (2) ·
Epigenomics (10) ·
Functional Genomics (1) ·
Gene Expression Analysis (1) ·
Gene annotation retrieval (1) ·
Genetics (1) ·
Genomics (42) ·
Genotyping (3) ·
High-throughput sequencing (1) ·
Homology (2) ·
InDel Discovery (1) ·
InDel discovery (12) ·
Integrated solution (2) ·
Mapping (3) ·
Metabolic reconstruction (1) ·
Metagenomics (13) ·
Motif (2) ·
Motif analysis (1) ·
Personal genomics (2) ·
Phylogenetics (8) ·
Population genetics (3) ·
Protein structure analysis (2) ·
Protein structures (1) ·
RNA-Seq (9) ·
RNA-Seq Alignment (30) ·
RNA-Seq Quantitation (16) ·
Read alignment (4) ·
Resequencing (1) ·
SNP Annotation (1) ·
SNP discovery (43) ·
SNP/Indel Detection (3) ·
Sequence analysis (7) ·
Sequencing (5) ·
Small RNA transcriptome (4) ·
Somatic mutations (1) ·
Structural variants (17) ·
Transcription Factor Binding Site identification (3) ·
Transcription regulation (1) ·
Transcriptome Analysis (1) ·
Whole Genome Resequencing (8) ·
Yeast one-hybrid (1) ·
Yeast two-hybrid (1) ·
genomics (1) ·
in vitro selection (1) ·
metagenomics (1) ·
miRNA (5) ·
microRNA (1) ·
pyrotags (1) ·
systems biology (2) ·
targeted resequencing and transcriptome sequencing (2)
Showing below up to 250 results starting with #1.
View (previous 250) (next 250) (20 | 50 | 100 | 250 | 500)
A
- AB Large Indel Tool
- AB Small Indel Tool
- ABBA
- ABySS
- ALEXA-Seq
- ALLPATHS
- Alta-Cyclic
- AMOS
- ANNOVAR
- ArrayStar
- ATAC
- Atlas-SNP2
B
- BamTools
- BamView
- Barcrawl Bartab
- Batman
- BayesCall
- BEAP
- BEDTools
- Belvu
- BFAST
- BING
- Biopython
- Bismark
- BLAT
- Blixem
- BOAT
- BOWTIE
- BRAT
- BreakDancer
- BreakSeq
- Breakway
- BS Seeker
- BS-Seq
- BSMAP
- BWA
C
- CABOG
- CARPET
- CASHX
- CATCH
- ChIPmeta
- CHiPSeq
- ChromaSig
- CisGenome
- CLCbio Genomics Workbench
- CleaveLand
- CloudBurst
- ClustDB
- CnD
- CNVer
- CnvHMM
- CNVseq
- Consensus
- Contrail
- CPTRA
- Crossbow
- Cufflinks
- Curtain
D
E
F
F cont.
G
- G-Mo.R-Seq
- G-SQZ
- Galign
- Gambit
- GASSST
- GASV
- GATK
- GEM library
- Geneious
- GenomeMapper
- GenomeTools
- GenVision
- GigaBayes
- GimmeMotifs
- GMAP
- Gnumap
- Goby framework
- Goseq
- GPSeq
- GSNAP
H
I
K
L
M
- MACS
- MagicViewer
- MapNext
- MapSplice
- MapView
- MAQ
- MAQGene
- Mauve
- MEGAN
- MetaSim
- MethylCoder
- MG-RAST
- MicroRazerS
- MICSA
- MIRA
- MiRanalyzer
- MiRDeep
- MirTools
- MochiView
- MoDIL
- MOM
- MOSAIK
- Mrfast
- MUMmer
- MUMmerGPU
- MuMRescueLite
- MuSICA 2
- Myrialign
N
N cont.
O
P
- PaCGeE
- Package
- PALMA
- PALMapper
- PanGEA
- Partek Genomics Suite
- PASS
- PatMaN
- PeakSeq
- PECAN
- PEMer
- PERalign
- PerM
- Phred
- Phred Phrap Consed Cross match
- Phymm
- PICS
- Pindel
- PIQA
- PolyBayesShort
- ProbeMatch
- ProbHD
- Proxygenes
- PyroBayes
- PyroMap
- PyroNoise
Q
R
- RazerS
- RDP Pyrosequencing Pipeline
- Readaligner
- Reconciliator
- RECOUNT
- RefCov
- Repitools
- Reptile
- ReSeqSim
- RGA
- RMAP
- RNA-MATE
- Rolexa
- RSEM
- Rsolid


