TEQC

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Application data

Biological application domain(s) Exome capture
Principal bioinformatics method(s) Sequencing quality control
Maintained? Maybe
Programming language(s) R
Interface type(s) Command line
Resource type(s) Command-line tool

Summary: Quality assessment of target enrichment experiments.

Description

Quality measures comprise specificity and sensitivity of the capture, enrichment, per-target read coverage and its relation to hybridization probe characteristics, coverage uniformity and reproducibility, and read duplicate analysis. Several diagnostic plots allow visual inspection of the data quality.





Links


References

  1. Hummel M, Bonnin S, Lowy E, Roma G.. 2011. Bioinformatics


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