mapping with gmap

[abakelaar]

Hi there

I'm trying to map data with gmap. It runs, but it takes hours.
he prints a message: no paths found for .... is this good or bad???
I've got paired-end files with each 6 gb
How much data gives gmap?? it's now 25gb.

greetings

[brdido]

That message is normal but it means that gmap could not find any alignment for that read. Path may refer to the algorithm used in gmap...