hello everyone,
I am working on SOLiD platform and want to use SOLiD data for RNAseq analysis. For that i am trying to utilize bowtie for mapping an ERANGE for RPKM. For bowtie mapping we need expanded genome. i am trying to utilize getsplicefa.py of ERANGE to get splice file. but while doing this is am getting the following error:
psyco not running
/share/apps/ERANGE/project/genome/commoncode/getsplicefa.py: version 3.2
43180
369006
could not get chr3:72692980-72695247
could not get chr3:72695415-72695619
could not get chr3:72695669-72704339
could not get chr3:72704428-72707527
could not get chr3:72707652-72708182
could not get chr3:72708239-72708321
could not get chr3:72708406-72711003
could not get chr3:72711152-72712888
could not get chr3:72713005-72713089
contt...
Any help is appreciable
Saha
I am working on SOLiD platform and want to use SOLiD data for RNAseq analysis. For that i am trying to utilize bowtie for mapping an ERANGE for RPKM. For bowtie mapping we need expanded genome. i am trying to utilize getsplicefa.py of ERANGE to get splice file. but while doing this is am getting the following error:
psyco not running
/share/apps/ERANGE/project/genome/commoncode/getsplicefa.py: version 3.2
43180
369006
could not get chr3:72692980-72695247
could not get chr3:72695415-72695619
could not get chr3:72695669-72704339
could not get chr3:72704428-72707527
could not get chr3:72707652-72708182
could not get chr3:72708239-72708321
could not get chr3:72708406-72711003
could not get chr3:72711152-72712888
could not get chr3:72713005-72713089
contt...
Any help is appreciable
Saha