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  • Combined assembly of 454 and Solexa reads

    I have got both 454 long reads(SR & PE, 400bp) and Solexa reads(100-150bp) for a genome, however, the combined assembly result is not as good as expected, using velvet, newbler, etc. Anyone who has such experiences please give some suggestions on the tool selection, thanks!

  • #2
    I'd try Mira:

    Download MIRA for free. MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4.


    J

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