Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Peaks vs. Genes

    I just thought I'd check on what people are using to correlate ChIP-Seq peaks vs. Gene locations at this point. I was trying to find a way to do it with Genome Browser. Any ideas?

  • #2
    You may use IGB or IGV to view the peaks and you may use the refseq gene ids (used if a gene has one or more transcripts). There are tutorials to use it.

    Comment


    • #3
      bedtools closestBed, R package ChIPpeakAnno...

      Comment


      • #4
        There is also CisGenome:

        Michael Black, Ph.D.
        ScitoVation LLC. RTP, N.C.

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Advancing Precision Medicine for Rare Diseases in Children
          by seqadmin




          Many organizations study rare diseases, but few have a mission as impactful as Rady Children’s Institute for Genomic Medicine (RCIGM). “We are all about changing outcomes for children,” explained Dr. Stephen Kingsmore, President and CEO of the group. The institute’s initial goal was to provide rapid diagnoses for critically ill children and shorten their diagnostic odyssey, a term used to describe the long and arduous process it takes patients to obtain an accurate...
          12-16-2024, 07:57 AM
        • seqadmin
          Recent Advances in Sequencing Technologies
          by seqadmin



          Innovations in next-generation sequencing technologies and techniques are driving more precise and comprehensive exploration of complex biological systems. Current advancements include improved accessibility for long-read sequencing and significant progress in single-cell and 3D genomics. This article explores some of the most impactful developments in the field over the past year.

          Long-Read Sequencing
          Long-read sequencing has seen remarkable advancements,...
          12-02-2024, 01:49 PM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, 12-17-2024, 10:28 AM
        0 responses
        27 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 12-13-2024, 08:24 AM
        0 responses
        43 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 12-12-2024, 07:41 AM
        0 responses
        29 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 12-11-2024, 07:45 AM
        0 responses
        42 views
        0 likes
        Last Post seqadmin  
        Working...
        X