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I have a few genes of interest which I want to check are present in my de novo transcriptome assembly. I was wondering if anyone knows a software or technique to do so.
Thanks in advance
Priyanka
Thanks in advance
Priyanka
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I guess you could blast your genes of interest against the transcriptome or even grep a bit of the gene sequence in the transcriptome file
HTH
D. -
I guess I will try the grep method. Thank you.
PriyankaComment
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There is a perl "fastagrep" that might help if you have a fasta version of your transcriptome
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Thanks tomc
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