Hi,
I don't get how the homo-polymer error modelling works in samtools,
could someone explain?
in the manual it says:
"-h INT Coefficient for modeling homopolymer errors. Given an l-long homopolymer run, the sequencing error of an indel of size s is modeled as INT*s/l. "
does this mean that a lower INT will allow for more homopolymer errors or the other way around.
Thanks
I don't get how the homo-polymer error modelling works in samtools,
could someone explain?
in the manual it says:
"-h INT Coefficient for modeling homopolymer errors. Given an l-long homopolymer run, the sequencing error of an indel of size s is modeled as INT*s/l. "
does this mean that a lower INT will allow for more homopolymer errors or the other way around.
Thanks
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