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I'm trying to compile bowtie for Windows x64 using MinGW64. I actually have a working binary for bowtie x64, but I can only get it to compile with BOWTIE_PTHREADS=0. When that is enabled, I get "Error: incorrect register '%eax' used with 'q' suffix" and make for bowtie fails. Anyone know any solution around this? I'm using pthreads from http://sourceforge.net/apps/trac/min...ile%20pthreads
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I have an operational (with threads) bowtie for Win7-x64 which I could make available if you wish. It comes with the usual disclaimer of warranty. I've run it for about a year with no problems. I will have to locate the notes for compiling though. -
That'd be great if you could provide me with it. If you have compiling notes to share too, that'd be helpful too for future/similar compilations. You wouldn't happen to have a working version of TopHat too?Originally posted by DWW1505 View PostComment
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I will to contact the researcher for whom it was built tonight. Please PM with your contact info as the files will be a bit much for email. TopHat (1.4.1 and 1.3.3), as implemented in my port, requires 64-bit Samtools, 64-bit Bowtie, several supporting files, and does not do .gz compression.Comment
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