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  • oxydeepu
    Member
    • Jul 2011
    • 41

    GTF file for reference of human transcriptome

    Hi all,

    I have the human transcriptome downloaded from unigene. Is there any other resources where you can get the human transcriptome.? I have the fasta file of the transcriptome. how can i make a reference annotation gtf file from the fasta file.?
    Please Help.

    Best Regards
    Deepak
  • arvid
    Senior Member
    • Jul 2011
    • 156

    #2
    It doesn't make sense to make a GTF file for a transcript fasta file, like yours. You use a GTF file to describe the transcript annotations for a genome fasta file.

    I'm not working on human, so other can chime in on good annotation sources.

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