How to calculate gene expression level

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fgh1124

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Join Date: Jan 2010

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#1

How to calculate gene expression level

07-11-2012, 06:10 PM

Hi, everyone!
I have the gtf annotation for mouse genome and rna-seq mapping to genome result(sam/bam). I want to know whether a software could calculate the genes' expression level based on these data.

Thanks for your time!

Last edited by fgh1124; 07-11-2012, 06:43 PM.
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kmcarr

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Join Date: May 2008

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#2

07-12-2012, 02:35 AM

Didn't someone answer this same question for you last March?

Help! How to calculate gene expression level (RPKM) in RNA-seq experiment - SEQanswers

http://seqanswers.com/forums/showthread.php?p=66700#post66700

Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

If you are looking for NGS Bioinformatics software the Software Hub Wiki is a good place to start.
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