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  • How to install BEDTools on Linux server

    Hi,all
    I have got a problem when I want to install BEDTools on a linux server:
    I have no root account,so when I do"cp bin/* /usr/local/bin",it tells me "Permission denied".
    It's there some solutions to this problem?
    I hope you could give me some suggestion.
    Thanks a lot.

    Wisense

  • #2
    i think you can put them anywhere you want, not just on /usr/local/bin. you could make your own /bin folder.

    mkdir ~/bin

    will make the directory in your home folder, then you can do cp bin/* ~/bin to copy the binaries etc over. Then you can add ~/bin to your PATH environment variable, or if you can't do that for whatever reason you can probably invoke the binaries explicitly, ie ~/bin/bamToBed

    Comment


    • #3
      Originally posted by zaratieg View Post
      i think you can put them anywhere you want, not just on /usr/local/bin. you could make your own /bin folder.

      mkdir ~/bin

      will make the directory in your home folder, then you can do cp bin/* ~/bin to copy the binaries etc over. Then you can add ~/bin to your PATH environment variable, or if you can't do that for whatever reason you can probably invoke the binaries explicitly, ie ~/bin/bamToBed
      It works.
      Thanks very much.

      Comment

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