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  • #1

    Scaling read counts for viewing on browser

    Hi,

    I am using MACs to get read counts and peaks from my ChIP-seq files. Although MACs scales the control and treatment data sets to calculate peaks, the read files I get are not scaled. I am wondering if there is a way to do this - either in MACs or another program - so that I can upload the scaled read count files into a genome browser (such as IGV) to create figures.

    Thanks for any suggestions!

    Mary
    Tags: chip-seq, scaled read counts
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