AGP file from AllPaths-LG Assembly

[coleoguy]

I have an invertebrate genome that I have assembled in AllPaths-LG. I am trying to figure out how to generate the appropriate AGP file for NCBI submission.

Any advice, ideas, or thoughts would be greatly appreciated.

[lexa]

did you solve the problem? right now, I have to solve the same problem.

[boetsie]

Have a look at this thread;

http://seqanswers.com/forums/showthread.php?t=23216&highlight=agp