how to get the final consensus by samtool - SEQanswers

You are currently viewing the SEQanswers forums as a guest, which limits your access. Click here to register now, and join the discussion

X

mingkunli

Member

Join Date: Jan 2009

Posts: 41
- Share
- Tweet
#1

how to get the final consensus by samtool

10-24-2009, 08:02 AM

using samtools -c, I can retrieve the consensus sequence without indel(from column 4).
using samtools -cf, although indel info is included, but seems no way to retrieve the final consensus, since indel are represented by **/+/-**.

Anyone can help me to retrieve the final consensus?
Tags: None

Previous template Next

Advancing Precision Medicine for Rare Diseases in Children

by seqadmin

Many organizations study rare diseases, but few have a mission as impactful as Rady Children’s Institute for Genomic Medicine (RCIGM). “We are all about changing outcomes for children,” explained Dr. Stephen Kingsmore, President and CEO of the group. The institute’s initial goal was to provide rapid diagnoses for critically ill children and shorten their diagnostic odyssey, a term used to describe the long and arduous process it takes patients to obtain an accurate...
- Channel: Articles
12-16-2024, 07:57 AM
Recent Advances in Sequencing Technologies

by seqadmin

Innovations in next-generation sequencing technologies and techniques are driving more precise and comprehensive exploration of complex biological systems. Current advancements include improved accessibility for long-read sequencing and significant progress in single-cell and 3D genomics. This article explores some of the most impactful developments in the field over the past year.

Long-Read Sequencing
Long-read sequencing has seen remarkable advancements,...
- Channel: Articles
12-02-2024, 01:49 PM

	Topics		Statistics	Last Post
	Evaluating Genome Sequencing for ECMO Patients in the NICU by seqadmin Started by seqadmin, 12-17-2024, 10:28 AM		0 responses 33 views 0 likes	Last Post by seqadmin 12-17-2024, 10:28 AM
	New Genetic Toolkit Refines Studies on Gene Function and Disease by seqadmin Started by seqadmin, 12-13-2024, 08:24 AM		0 responses 48 views 0 likes	Last Post by seqadmin 12-13-2024, 08:24 AM
	Study Links Brain Mechanism to Emotional Responses in Animals and Humans by seqadmin Started by seqadmin, 12-12-2024, 07:41 AM		0 responses 34 views 0 likes	Last Post by seqadmin 12-12-2024, 07:41 AM
	Study Identifies Ribosomal RNA Fingerprints as Early Cancer Biomarkers by seqadmin Started by seqadmin, 12-11-2024, 07:45 AM		0 responses 46 views 0 likes	Last Post by seqadmin 12-11-2024, 07:45 AM

Working...

X