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  • albireo
    Member
    • Sep 2012
    • 39

    Obtaining .bed list of hg19 genes

    Hi,

    apologies if this has been asked before.

    I would like to download/build a simple .bed file with all the known (UCSC, EnsEMBL or RefSeq) hg19 genes.

    Is there such a thing somewhere? If not, how do I go about building one?

    Thank you in advance.
    Last edited by albireo; 02-11-2013, 11:42 AM.
  • swbarnes2
    Senior Member
    • May 2008
    • 910

    #2
    You can use BioMart on ensembl.org to download the coordinates of all the genes.

    Comment

    • GenoMax
      Senior Member
      • Feb 2008
      • 7142

      #3
      Or use the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables?command=start).

      Both BioMart and UCSC will get the info you need. You may already be familiar with one or other.

      Comment

      • albireo
        Member
        • Sep 2012
        • 39

        #4
        Thank you both!

        Comment

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