splitting longer reads into two smaller reads for bowtie input

[a_mt]

Hi all,

I have sequence data from Illumina GA with read length of 95 bp's (after trimming).
Now I am using a tool which works with bowtie. Since my read length is above 50bp's and bowtie doesn't allow gapped alignment, I want to split the read into two shorter reads.

Is there any tool to do this??

Thank you.