Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
One approach would be to take the frequency of all 50-mers across the genome (those not matching TEs), and you could then map those to the genome to identify the location/depth of the repeats. Both steps could be accomplished with Vmatch or Tallymer.
-
repeats
I am trying to find a repeat regions (not Transposons). Is there a way i can find a 50 bp region repeating across the genome ?. Need to find the number of times that 50 bp is repeating in the genome.
I have tried GEM-mappability and Uniqueome, but GEM-mappability didnt work. Current version of GEM-tools do not have this feature. Uniqueome gives a score and it depends on the sequencing data. But i dont have any sequence data.
-Alaguraj.V
Latest Articles
Collapse
-
by seqadmin
The first FDA-approved CRISPR-based therapy marked the transition of therapeutic gene editing from a dream to reality1. CRISPR technologies have streamlined gene editing, and CRISPR screens have become an important approach for identifying genes involved in disease processes2. This technique introduces targeted mutations across numerous genes, enabling large-scale identification of gene functions, interactions, and pathways3. Identifying the full range...-
Channel: Articles
08-27-2024, 04:44 AM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, Yesterday, 08:02 AM
|
0 responses
10 views
0 likes
|
Last Post
by seqadmin
Yesterday, 08:02 AM
|
||
Started by seqadmin, 09-03-2024, 08:30 AM
|
0 responses
12 views
0 likes
|
Last Post
by seqadmin
09-03-2024, 08:30 AM
|
||
Started by seqadmin, 08-27-2024, 04:40 AM
|
0 responses
21 views
0 likes
|
Last Post
by seqadmin
08-27-2024, 04:40 AM
|
||
New Single-Molecule Sequencing Platform Introduces Advanced Features for High-Throughput Genomics
by seqadmin
Started by seqadmin, 08-22-2024, 05:00 AM
|
0 responses
358 views
0 likes
|
Last Post
by seqadmin
08-22-2024, 05:00 AM
|
Leave a comment: