I am looking at the per base quality score of my RNA-Seq data, and found that the quality looks great. (as attached)
But when I look at the per base sequence, the first 10 bases seems to be varying as if certain bases is preferred at certain positions. (as attached)
Do I trim these off?
But when I look at the per base sequence, the first 10 bases seems to be varying as if certain bases is preferred at certain positions. (as attached)
Do I trim these off?
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