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  • cufflinks without paired reads

    I'm just getting my feet wet with cufflinks.

    Is there an option for specifying that I do not have paired reads?

    Thanks,

    Chris

  • #2
    I don't think there's anything you need to specify. I don't have paired-end reads and have been running Cufflinks to help with RNASeq analysis for a few months now. Just try the default options first.

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