database of known ChIP-seq peaks

[bogdan]

Dear all,

please could you suggest any database/collections of known TFbs/peaks based on existing ChIP-seq experiments in the literature ? And an algorithm to correlate our lists of ChIP-seq peaks with the existing collections of ChIP-seq peaks ? thank you !

Bogdan

[mikep]

ENCODE is a good place to start for chipseq in usable format

http://genome.ucsc.edu/ENCODE/downloads.html

bedtools intersect will find your overlaps

http://code.google.com/p/bedtools/

[rnaNGS]

chipBase is a database for decoding the transcriptional regulation of mRNAs and ncRNAs from ChIP-Seq data.

ChIPBase includes millions of peaks that were generated by 543 ChIP-Seq experiments.

http://rna.sysu.edu.cn/chipbase/

[kopi-o]

CistromeMap: http://cistrome.org/pc/

is another alternative