Installing CisGenome

[Mich_Scientist]

Hello,

I have been trying to install CisGenome on my Linux system (Ubuntu 9.10), but I keep getting the following error when I run "make":

cd cisgenome_project
sudo make

makefile:3: *** missing separator. Stop.

I don't know what to do, I have been searching through manuals and forums for weeks now. I have the build_essential package installed. Any help would be greatly appreciated!

Thanks!

[nickloman]

Not sure, it might be that your makefile utility is non-standard.

Try running 'gmake' instead of 'make'.

If not installed you need to install GNU make (www.gnu.org)

[lqscici]

installing cisgenome

Hello,

I just saw your message about installing cisgenome, I met the same
"makefile:3: *** missing separator. Stop." problem now...

Have you resolved it yet? If yes, can you give me some help?

Thanks~

[Maxim]

Hi,

perhaps a little outdated, but I just saw this and can report that cisgenome v1.2 just works fine on Ubuntu 10.04:

1. The package comes with pre-compiled binaries (in cisgenome_v1.2/bin folder, just copy to a place like /usr/local/bin) -> that's it
2. In case you like to compile on your own:
change to unpacked directory and say

sh makefile

Compiles fine with the exception of tablesorter, I guess you will have to include some additional things in the header of the tablesorter.cpp file!
Maxim