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  • BWA error

    I am trying to map a read to hg19 using BWA(0.7.4-r385).it's show "Segmentation fault",but I cut the read to two sequences,then it's normally.
    Read:
    @HWI-ST1066:139:H157AADXX:1:2111:13586:46539 2:N:0:GATAGACA
    CCTACTTCAGGGTCATAAAGCCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCATAGG
    +
    00<<BBBBBBBBBB<BBBBBBBBBBBBB<BBB7<07<<BBBBB<<<<<<<<<<<77<0<0<7<7<0<'''00

  • #2
    Is this a real or a virtual server? What OS are you using? Did you compile the program (and build the indexes) yourself on this machine? Amount of memory?

    Comment


    • #3
      it's a real,use centos,and compile the program myself.Now,the problem is solved,but that use bwa v0.6.2, I thinks that problem is new version(bwa-0.7.5) bug.

      Comment


      • #4
        0.75 or 0.75a?

        Also, bwa sampe or bwa mem?

        Comment


        • #5
          Originally posted by winsettz View Post
          0.75 or 0.75a?

          Also, bwa sampe or bwa mem?
          I have tested the two versions,used bwa sampe

          Comment

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