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  • wrch
    Junior Member
    • Jan 2014
    • 7

    Issues with Evigan as combiner of gene models

    Hi,
    I want to run Evigan to combine two gene prediction models from a whole genome sequencing project.I have downloaded the software and installed it by the 'make all' command as mentioned.But problems occurred during the test run with the ''run_gff2txt3.pl" script.Several error messages appear e.g. 1)Bareword found where operator expected at run_gff2txt3.pl line 11, near "*
    2)syntax error at run_gff2txt3.pl line 10 near "* and in the last line
    3)execution of run_gff2txt3.pl aborted due to compilation errors
    I don't know what to do .please help.
    again plz let me know what are the prerequisite to run Evigan.
  • inayat shaikh
    Junior Member
    • Jul 2014
    • 2

    #2
    Hi,
    I have also faced the same issue while running run_gff2txt3.pl script, the solution is to remove all the texts (in the top of run_gff2txt3.pl file) in the comments and run it again. this will resolve your problem

    run_gff2txt3.pl file should start like this below

    #!/usr/perl -w

    if(scalar @ARGV!=3)
    {
    print "usage: $0 seqnames.config sources.config dst_dir\n";
    exit;
    }

    my ($seqnames,$sources,$dst_dir)=@ARGV;

    open IN,$seqnames or die $!;

    open IN_SOURCES,$sources or die $!;
    my @sources_array = <IN_SOURCES>;
    close IN_SOURCES;

    Comment

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