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  • Votinhkiem90
    Member
    • Sep 2013
    • 30

    How to make alias file and run rpsbalst

    hi everyone.
    I have a problem, I have downloaded CDD database on NCBI and install ncbi-blast+. but when i run rpsblast have an error.
    "BLAST Database error: Could not find volume or alias file (./home/lamnguyen/bin/ncbi-blast-2.2.29+/CDD/Cdd) referenced in alias file (/home/lamnguyen/bin/ncbi-blast-2.2.29+/bin/mycdd)"

    mycdd has cread by http://www.ncbi.nlm.nih.gov/Structur....shtml#RPSBFtp

    What should I do????:
  • TiborNagy
    Senior Member
    • Mar 2010
    • 329

    #2
    Please share us the steps.

    Comment

    • Votinhkiem90
      Member
      • Sep 2013
      • 30

      #3
      Originally posted by TiborNagy View Post
      Please share us the steps.
      Thank for attention! I have finished it. I forgot run makeprofiledb to creat database before running rpsblast.

      Comment

      • maubp
        Peter (Biopython etc)
        • Jul 2009
        • 1544

        #4
        Or just download the CDD database ready to use from ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/little_endian/

        Comment

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