Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Problems with galaxy bedgraph to bigwig

    I am trying to convert a bedgraph file ta bigwig file using galaxy (not able to do in linux since the bedGraphToBigWig script runs only in 64 bits and I am running 32 bits version).

    I upload my bedgraph file and afterwards my genome file (genome.txt) which looks like the following:
    contig1 32486
    (name) (number of bases)

    When I execute the Wig/bedgraph to bigWIg in galaxy it tells me:

    Unspecified genome build, click the pencil icon in the history item to set the genome build.

    How can I tell Galaxy my genome build is genome.txt? Is the format of my genome.txt wrong?

  • #2
    A better place to post this question is https://biostar.usegalaxy.org/

    You can also search for answers at http://galaxyproject.org/search/usegalaxy/

    What you have is known as a custom build in Galaxy. See https://wiki.galaxyproject.org/Learn/CustomGenomes for how to tell Galaxy that that is what it is.

    Comment


    • #3
      Thanks, I´ll take a look on biostar.

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Advancing Precision Medicine for Rare Diseases in Children
        by seqadmin




        Many organizations study rare diseases, but few have a mission as impactful as Rady Children’s Institute for Genomic Medicine (RCIGM). “We are all about changing outcomes for children,” explained Dr. Stephen Kingsmore, President and CEO of the group. The institute’s initial goal was to provide rapid diagnoses for critically ill children and shorten their diagnostic odyssey, a term used to describe the long and arduous process it takes patients to obtain an accurate...
        12-16-2024, 07:57 AM
      • seqadmin
        Recent Advances in Sequencing Technologies
        by seqadmin



        Innovations in next-generation sequencing technologies and techniques are driving more precise and comprehensive exploration of complex biological systems. Current advancements include improved accessibility for long-read sequencing and significant progress in single-cell and 3D genomics. This article explores some of the most impactful developments in the field over the past year.

        Long-Read Sequencing
        Long-read sequencing has seen remarkable advancements,...
        12-02-2024, 01:49 PM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 12-17-2024, 10:28 AM
      0 responses
      33 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 12-13-2024, 08:24 AM
      0 responses
      48 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 12-12-2024, 07:41 AM
      0 responses
      34 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 12-11-2024, 07:45 AM
      0 responses
      46 views
      0 likes
      Last Post seqadmin  
      Working...
      X