I ended up giving up installing it on my Linux laptop and did a clean install of Linux on a partition of my Windows computer.
Then installed on there and it worked... Didn't really SOLVE my problems but I can use it so I'll take that for now since it's the first step in my work.
Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
Good luck with Prokka installation. Though it is a handy tool, it has a scary list of requirements and I couldn't get over it in three attempts so far and gave up for now.
Leave a comment:
-
Thank you for the help. It was all the encouragement I needed to carry on and get PROKKA working and ditch Glimmer!
Leave a comment:
-
-
Yes, you are right.
Glimmer is just for gene prediction, while prokka is a kind of all-in-one tools, doing both, gene prediction (or, to be more accurate "feature prediction" as not only genes but also rRNA and tRNA prediction can be included) and annotation.
Leave a comment:
-
Glimmer vs Prokka
Hello,
I am wondering if there is some cross-over in the functions of Glimmer and Prokka. As I understand it, Glimmer is able to predict orf's and extract them. Prokka is is used for annotation. Does Prokka therefore also do orf/gene prediction also?
I've tried to see this for myself but am struggling to properly install Prokka. Glimmer seems to behave exactly as I'd expect.
Thanks!Tags: None
Latest Articles
Collapse
-
by seqadmin
Non-coding RNAs (ncRNAs) do not code for proteins but play important roles in numerous cellular processes including gene silencing, developmental pathways, and more. There are numerous types including microRNA (miRNA), long ncRNA (lncRNA), circular RNA (circRNA), and more. In this article, we discuss innovative ncRNA research and explore recent technological advancements that improve the study of ncRNAs.
Nobel Prize for MicroRNA Discovery
This week,...-
Channel: Articles
10-07-2024, 08:07 AM -
-
by seqadmin
Metagenomics has improved the way researchers study microorganisms across diverse environments. Historically, studying microorganisms relied on culturing them in the lab, a method that limits the investigation of many species since most are unculturable1. Metagenomics overcomes these issues by allowing the study of microorganisms regardless of their ability to be cultured or the environments they inhabit. Over time, the field has evolved, especially with the advent...-
Channel: Articles
09-23-2024, 06:35 AM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, Yesterday, 07:29 AM
|
0 responses
15 views
0 likes
|
Last Post
by seqadmin
Yesterday, 07:29 AM
|
||
Genetic Barcodes and Single-Cell Sequencing Illuminate Tumor Initiation and Chemoresistance in Breast Cancer
by seqadmin
Started by seqadmin, 10-15-2024, 06:35 AM
|
0 responses
11 views
0 likes
|
Last Post
by seqadmin
10-15-2024, 06:35 AM
|
||
Started by seqadmin, 10-14-2024, 02:44 PM
|
0 responses
14 views
0 likes
|
Last Post
by seqadmin
10-14-2024, 02:44 PM
|
||
Started by seqadmin, 10-11-2024, 06:55 AM
|
0 responses
19 views
0 likes
|
Last Post
by seqadmin
10-11-2024, 06:55 AM
|
Leave a comment: