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Hi- I am trying to addFeatures column via cummerBund. I have tried the script on my friend's computer and it works fine. but, it doesn't seem to add anything on mine. It does not even show me any errors. but when I try to look whether it added the feature (which is basically another column), i realize that it did not add anything. here are the commands used:
cuff=readCufflinks(dbFile="cuffData.db", genome=mm9)
ensemble_type_mapping_data = read.table("/Users/haabbas/Desktop/Billur_R/Cummerbound_analysis/the_ensemble_mapping.txt", header=F)
addFeatures(cuff, ensemble_type_mapping_data, level="isoforms")
Expected_File_with_added_Feature<-annotation(isoforms(cuff))
It does not show any errors but it just fails. Any advice is appreciated.
cuff=readCufflinks(dbFile="cuffData.db", genome=mm9)
ensemble_type_mapping_data = read.table("/Users/haabbas/Desktop/Billur_R/Cummerbound_analysis/the_ensemble_mapping.txt", header=F)
addFeatures(cuff, ensemble_type_mapping_data, level="isoforms")
Expected_File_with_added_Feature<-annotation(isoforms(cuff))
It does not show any errors but it just fails. Any advice is appreciated.