Thank you very much!!!
Let me try try it first~
Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
If you used progressiveMauve to generate the alignments then there may be (.xmfa) format alignment files in the directory you did the work in. If they are not there you may have to run mauve on the command line (http://darlinglab.org/mauve/user-gui...sivemauve.html).
Once you have the alignment files you can use this script http://www.bioperl.org/wiki/Converting_alignment_files (latest versions is supposed to be here: https://github.com/lskatz/lskScripts to convert .xmfa files to fasta.
Leave a comment:
-
Dear all,
I really have no idea on it and now I only have reordered contigs and have no idea on draft genome development.........
Could anyone give me a hand??
Leave a comment:
-
How to get complete consensus genome from ordered contigs developed from Mauve?
Dear all,
I am working on de novo assembly in order to get the whole target genome sequence for phylogenetic analysis.
And now I successfully run velvet to obtain contigs and reorder those contigs using Mauve ---- a java based GUI tools with the help of reference sequence.
However, I have no idea on retrieving complete target genome sequence (consensus sequence). Could anyone give me a hand?
Thank you very much for your kind attention!!!
Best Regards
MichaelTags: None
Latest Articles
Collapse
-
by seqadmin
During the COVID-19 pandemic, scientists observed that while some individuals experienced severe illness when infected with SARS-CoV-2, others were barely affected. These disparities left researchers and clinicians wondering what causes the wide variations in response to viral infections and what role genetics plays.
Jean-Laurent Casanova, M.D., Ph.D., Professor at Rockefeller University, is a leading expert in this crossover between genetics and infectious...-
Channel: Articles
09-09-2024, 10:59 AM -
-
by seqadmin
The first FDA-approved CRISPR-based therapy marked the transition of therapeutic gene editing from a dream to reality1. CRISPR technologies have streamlined gene editing, and CRISPR screens have become an important approach for identifying genes involved in disease processes2. This technique introduces targeted mutations across numerous genes, enabling large-scale identification of gene functions, interactions, and pathways3. Identifying the full range...-
Channel: Articles
08-27-2024, 04:44 AM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, 09-11-2024, 02:44 PM
|
0 responses
11 views
0 likes
|
Last Post
by seqadmin
09-11-2024, 02:44 PM
|
||
Started by seqadmin, 09-06-2024, 08:02 AM
|
0 responses
145 views
0 likes
|
Last Post
by seqadmin
09-06-2024, 08:02 AM
|
||
Started by seqadmin, 09-03-2024, 08:30 AM
|
0 responses
152 views
0 likes
|
Last Post
by seqadmin
09-03-2024, 08:30 AM
|
||
Started by seqadmin, 08-27-2024, 04:40 AM
|
0 responses
161 views
0 likes
|
Last Post
by seqadmin
08-27-2024, 04:40 AM
|
Leave a comment: