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  • #1

    FASTA command line

    We want to compare the sequences of cytokeratin 4 (NP_032501.2) and of cytokeratin 7 (NP_149064.1). Using the appropriate tool in the fasta suite and the PAM120 matrix, answer the following questions:

    A. What is the identity percentage shared between the 2 sequences?

    B. What is the size in amino acids of the best alignment in this case?

    C. Which score is associated to the global-global alignment?

    D. How many gaps are found in the global-global alignement?
    Tags: None
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