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  • #1

    Consensus from a VCF file

    Hi,

    I have SNP/indel calls in a VCF file, is there a script around that produces a consensus sequence using a reference and the calls in the VCF? I was checking the GATK pages but could not find any related stuff there.

    Szilva
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  • #2
    FastaAlternateReferenceMaker

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