bedtools command output

[cmccabe]

Not sure what the output of this command means, but I am trying to get the average coverage per bait in a bed file. Thank you .

 coverageBed -hist -abam IonXpress_009_150603.bam -b epilepsy70_medex.bed | grep ^all > output.hist.all.txt

all	0	188	195018	0.0009640
all	1	148	195018	0.0007589
all	2	175	195018	0.0008974

[WhatsOEver]

Maybe you should have a look at the bedtools website in order to understand what you are doing

http://bedtools.readthedocs.org/en/latest/content/tools/coverage.html

[cmccabe]

I have read that but still not sure. Thank you