Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Identifying a draft genome

    Hi everyone,
    I have a draft genome which was binned from a bacterial metagenome. I know for certain that the genome doesn't have a 16s gene in it, but should be fairly complete with 42 single copy bacterial genes present. I wish to identify the taxonomy of this genome. By BLASTing several ORFs in the genome against NCBI's nr database I have a reasonable idea to which taxon it belongs, but when running MAUVE to align my binned genome and a draft genome from NCBI I don't get a nicely re-ordered genome, only a mess...
    so my question has two parts:
    1. Is there an online tool to which I can upload my draft genome and it will run it again its database to produce similarity values to known genomes ?
    2. Which other tools would you recommend in order to asses the completeness of the genome ?

    Thanks!

Latest Articles

Collapse

  • seqadmin
    Investigating the Gut Microbiome Through Diet and Spatial Biology
    by seqadmin




    The human gut contains trillions of microorganisms that impact digestion, immune functions, and overall health1. Despite major breakthroughs, we’re only beginning to understand the full extent of the microbiome’s influence on health and disease. Advances in next-generation sequencing and spatial biology have opened new windows into this complex environment, yet many questions remain. This article highlights two recent studies exploring how diet influences microbial...
    02-24-2025, 06:31 AM
  • seqadmin
    Quality Control Essentials for Next-Generation Sequencing Workflows
    by seqadmin




    Like all molecular biology applications, next-generation sequencing (NGS) workflows require diligent quality control (QC) measures to ensure accurate and reproducible results. Proper QC begins at nucleic acid extraction and continues all the way through to data analysis. This article outlines the key QC steps in an NGS workflow, along with the commonly used tools and techniques.

    Nucleic Acid Quality Control
    Preparing for NGS starts with isolating the...
    02-10-2025, 01:58 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 03-03-2025, 01:15 PM
0 responses
46 views
0 likes
Last Post seqadmin  
Started by seqadmin, 02-28-2025, 12:58 PM
0 responses
167 views
0 likes
Last Post seqadmin  
Started by seqadmin, 02-24-2025, 02:48 PM
0 responses
525 views
0 likes
Last Post seqadmin  
Started by seqadmin, 02-21-2025, 02:46 PM
0 responses
256 views
0 likes
Last Post seqadmin  
Working...
X