Tweet
Hi,
I checked a few variant allele frequencies but I got different result with different websites.
I checked my variances in NHLBI Exome Sequencing Project (ESP)
http://evs.gs.washington.edu/EVS/
and also check with this site http://db.systemsbiology.net/kaviar/ from system biology.
for example for the following variance I got MAF = 0.43 from ESP and MAF < 0.01 from Kaviar !
Chromosome 10: 46999577 - 46999577
Can anybody tell me the popular and academic accepted way of reporting allele frequency in papers ?
I checked a few variant allele frequencies but I got different result with different websites.
I checked my variances in NHLBI Exome Sequencing Project (ESP)
http://evs.gs.washington.edu/EVS/
and also check with this site http://db.systemsbiology.net/kaviar/ from system biology.
for example for the following variance I got MAF = 0.43 from ESP and MAF < 0.01 from Kaviar !
Chromosome 10: 46999577 - 46999577
Can anybody tell me the popular and academic accepted way of reporting allele frequency in papers ?