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Hello!
I am very confused...I would like to get the latest beagle files from vcf files from phase 3 version 5 of the 1000 genomes data here:
http://bochet.gcc.biostat.washington...es_phase3_v5a/, which uses these 1000 Genomes vcf files: ftp://ftp.1000genomes.ebi.ac.uk/vol1...ease/20130502/
In particular I am trying to get something like what was available for the previous releases to create the files:
ALL.chr1.phase1_release_v2.20101123.filt.bgl.gz
ALL.chr16.phase1_release_v2.20101123.filt.tabix.gz
ALL.chr1.phase1_release_v2.20101123.filt.markers
Would I need to modify the script here with the BEAGLE utilities?
I am very confused...I would like to get the latest beagle files from vcf files from phase 3 version 5 of the 1000 genomes data here:
http://bochet.gcc.biostat.washington...es_phase3_v5a/, which uses these 1000 Genomes vcf files: ftp://ftp.1000genomes.ebi.ac.uk/vol1...ease/20130502/
In particular I am trying to get something like what was available for the previous releases to create the files:
ALL.chr1.phase1_release_v2.20101123.filt.bgl.gz
ALL.chr16.phase1_release_v2.20101123.filt.tabix.gz
ALL.chr1.phase1_release_v2.20101123.filt.markers
Would I need to modify the script here with the BEAGLE utilities?
