Any way to check if a SNP is present in 1000 genomes

[yuanzhi]

I went to the browser of 1000 genomes at http://browser.1000genomes.org/index.html. It seems like I can only type in a gene name. Is there any interface in 1000 genomes where I can type in a SNP position, e.g., chrN:123456, to check if it is in 1000 genomes?

Thanks!

[gglusman]

Try http://db.systemsbiology.net/gestalt/cgi-pub/Kaviar - hope that helps.

[Simon Anders]

This was already discussed, in this thread:

http://seqanswers.com/forums/showthread.php?t=5443

Note especially post #3.

[laura]

You could also use an ensembl url like

http://browser.1000genomes.org/Homo_sapiens/Location/View?r=6:133017695-133161157