Hello,
I am using Dindel for callind Indels on Novo aligned bam files. I was successful in generating the variant files. But while generating the glf files, I am getting BMIDERROR, segmentation fault. I have nearly 216 variant files generated out of the makewindows program. In the next step, while some of the glf files are generated without segmentation fault, other glf files are not proper due to segmentation fault.
Has anyone come across the same problem?
I am running this in cluster and I am giving all the 216 variant files as array jobs simultaneously.
Thanks,
Srividya
-
Spatial biology is an exciting field that encompasses a wide range of techniques and technologies aimed at mapping the organization and interactions of various biomolecules in their native environments. As this area of research progresses, new tools and methodologies are being introduced, accompanied by efforts to establish benchmarking standards and drive technological innovation.
3D Genomics
While spatial biology often involves studying proteins and RNAs in their...01-01-2025, 07:30 PM -
Many organizations study rare diseases, but few have a mission as impactful as Rady Children’s Institute for Genomic Medicine (RCIGM). “We are all about changing outcomes for children,” explained Dr. Stephen Kingsmore, President and CEO of the group. The institute’s initial goal was to provide rapid diagnoses for critically ill children and shorten their diagnostic odyssey, a term used to describe the long and arduous process it takes patients to obtain an accurate...12-16-2024, 07:57 AM