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  • JPC
    Senior Member
    • May 2008
    • 116

    Time required for exome assembley

    With a cluster like this;

    (https://products.appliedbiosystems.c...2&tab=TechSpec)

    and a tool like BWA how long are we talking to assemble an ABI SOLiD4, Sure select, 30X human exome? hours or days?
  • ulz_peter
    Senior Member
    • Feb 2010
    • 219

    #2
    I guess you mean alignment (as you mention BWA as program)
    I do whole-exome alignment on a (relatively cheap) quadcore HP-workstation with 16GB ram within ~2h. For alignment / SNP calling with BWA you definitely do not need a HPC-Cluster setup.

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