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Hi NGS user,
I'm analysing BAM alignment on a rare Mendelian disease. I don't know how I could extract any information as to whether two variants come from the same or different chromosomes/alleles. To perform SNP/Indel calling, I use bioperl and biosamtools package. Does anyone know if there is a library/tool/function to predict if two mutation/deletions are on the same allele/read or on different allele/read?
Thanx a lot,
Best
Maria Elena
I'm analysing BAM alignment on a rare Mendelian disease. I don't know how I could extract any information as to whether two variants come from the same or different chromosomes/alleles. To perform SNP/Indel calling, I use bioperl and biosamtools package. Does anyone know if there is a library/tool/function to predict if two mutation/deletions are on the same allele/read or on different allele/read?
Thanx a lot,
Best
Maria Elena