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  • CASAVA_v1.8.1 Installation Query

    I'm getting the following error while installing CASAVA_v1.8.1 in Ubuntu 11.04
    Below is the error message i got during the installation. I'll highly appreciate any of your help.

    In short the error message: PTHREADS NOT FOUND

    when i verified, i found pthreads.h file in /usr/include/

    So here is the complete error message

    boost-1_44_0 installed successfully
    -- Successfuly built boost 1.44.0 from the distribution package...
    -- Check if the system is big endian
    -- Searching 16 bit integer
    -- Looking for sys/types.h
    -- Looking for sys/types.h - found
    -- Looking for stdint.h
    -- Looking for stdint.h - found
    -- Looking for stddef.h
    -- Looking for stddef.h - found
    -- Check size of unsigned short
    -- Check size of unsigned short - done
    -- Using unsigned short
    -- Check if the system is big endian - little endian
    -- Looking for floorf
    -- Looking for floorf - found
    -- Looking for round
    -- Looking for round - found
    -- Looking for roundf
    -- Looking for roundf - found
    -- Looking for powf
    -- Looking for powf - found
    -- Looking for erf
    -- Looking for erf - found
    -- Looking for erf
    -- Looking for erf - found
    -- Looking for erfc
    -- Looking for erfc - found
    -- Looking for erfc
    -- Looking for erfc - found
    -- Found ZLIB header: /usr/local/include/zlib.h
    -- Found ZLIB library: /usr/local/lib/libz.so
    -- gzip compression supported
    -- Found BZIP2 header: /usr/local/include/bzlib.h
    -- Found BZIP2 library: /usr/local/lib/libbz2.a
    -- bzip2 compression supported
    -- pthread headers: /usr/include
    -- pthread library: PTHREAD_LIBRARY-NOTFOUND
    CMake Error at cmake/macros.cmake:90 (message):
    pthread library is required to build the CASAVA
    Call Stack (most recent call first):
    cmake/cxxConfigure.cmake:87 (casava_find_boost)
    c++/CMakeLists.txt:33 (include)


    -- Configuring incomplete, errors occurred!
    Couldn't configure the project:

    /cloud/soft/casava/CASAVA_v1.8.1/CASAVA_v1.8.1-build/bootstrap/bin/cmake -H"/cloud/soft/casava/CASAVA_v1.8.1/src" -B"/cloud/soft/casava/CASAVA_v1.8.1/CASAVA_v1.8.1-build" -G"Unix Makefiles" -DCASAVA_PREFIX:PATH= -DCASAVA_EXEC_PREFIX:PATH= -DCMAKE_INSTALL_PREFIX:PATH= -DCASAVA_BINDIR:PATH= -DCASAVA_LIBDIR:PATH= -DCASAVA_LIBEXECDIR:PATH= -DCASAVA_INCLUDEDIR:PATH= -DCASAVA_DATADIR:PATH= -DCASAVA_DOCDIR:PATH= -DCASAVA_MANDIR:PATH= -DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo

    Moving CMakeCache.txt to CMakeCache.txt.removed

  • #2
    sorry for reposting the same query...

    this biostar answer solved my ploblem

    [/usr/lib]$ sudo ln -s /usr/lib/x86_64-linux-gnu/libz.so /usr/lib
    [/usr/lib]$ sudo ln -s /usr/lib/x86_64-linux-gnu/libpth* /usr/lib

    biostar link: http://biostar.stackexchange.com/que...r-ubuntu-11-04

    SEQanswer link: http://seqanswers.com/forums/showthread.php?t=11106

    --
    anseq

    Comment


    • #3
      Anseq: CASAVA v.1.8.2 is out. You should consider switching to that version.

      Comment


      • #4
        waitting for answer

        Comment


        • #5
          An alternative solution to creating the links seems to be adding /usr/lib/x86_64-linux-gnu to the LIBRARY_PATH

          export LIBRARY_PATH=/usr/lib/x86_64-linux-gnu:$LIBRARY_PATH

          Comment

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