hello
I am new in programming, i want to match pattren in fasta sequence and extract sequence from fasta file
for example here is fasta sequence is
>geneA
ATGTGCACGAGACGTCTGGTCGTCGTCGTCGCTGCGCGCGCGTATTAACCCCGCGGCTTTTCTTTCTT
>pattren
ATGGCGTTCGTATTAACC
i need a script which align pattren and fetch highly similar sequence from geneA.
I am new in programming, i want to match pattren in fasta sequence and extract sequence from fasta file
for example here is fasta sequence is
>geneA
ATGTGCACGAGACGTCTGGTCGTCGTCGTCGCTGCGCGCGCGTATTAACCCCGCGGCTTTTCTTTCTT
>pattren
ATGGCGTTCGTATTAACC
i need a script which align pattren and fetch highly similar sequence from geneA.