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Old 01-23-2015, 03:47 AM   #3
titusbrown
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Location: Midwest

Join Date: Aug 2013
Posts: 8
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There are a number of similar tools now --

Digital normalization, http://ivory.idyll.org/blog/diginorm-paper-posted.html

Trinity's in silico read normalization, based on Jellyfish and custom Perl scripts: http://trinityrnaseq.sourceforge.net...alization.html

NeatFreq, written in Java (I think): http://www.biomedcentral.com/1471-2105/15/357/abstract

Mira also contains an implementation of a similar approach.

I'd love to see a comparison of the algorithms in use! I know what Trinity's approach does, but I haven't looked into NeatFreq, BBNorm, or Mira.

--titus
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