View Single Post
Old 01-23-2015, 02:47 AM   #3
Junior Member
Location: Midwest

Join Date: Aug 2013
Posts: 8

There are a number of similar tools now --

Digital normalization,

Trinity's in silico read normalization, based on Jellyfish and custom Perl scripts:

NeatFreq, written in Java (I think):

Mira also contains an implementation of a similar approach.

I'd love to see a comparison of the algorithms in use! I know what Trinity's approach does, but I haven't looked into NeatFreq, BBNorm, or Mira.

titusbrown is offline   Reply With Quote